BioSimulators-BioNetGen documentation

BioSimulators-BioNetGen provides a BioSimulators-compliant command-line interface to the BioNetGen biological simulation tool. A Docker image for this package is also available.

This command-line interface and Docker image enable users to use BioNetGen to execute COMBINE/OMEX archives that describe one or more simulation experiments (in SED-ML format) of one or more models (in BNGL format).

A list of the algorithms and algorithm parameters supported by BioNetGen is available at BioSimulators.

A simple web application and web service for using BioNetGen to execute COMBINE/OMEX archives is also available at runBioSimulations.