Index

A

add_model_attribute_change_to_task() (in module biosimulators_bionetgen.utils)

add_variables_to_model() (in module biosimulators_bionetgen.utils)

B

bionetgen_path (biosimulators_bionetgen.config.Config attribute) BioNetGenWarning biosimulators_bionetgen module biosimulators_bionetgen.config module biosimulators_bionetgen.core module

biosimulators_bionetgen.data_model module biosimulators_bionetgen.io module biosimulators_bionetgen.utils module biosimulators_bionetgen.warnings module

C

Config (class in biosimulators_bionetgen.config)

create_actions_for_simulation() (in module biosimulators_bionetgen.utils)

E

exec_bionetgen_task() (in module biosimulators_bionetgen.utils) exec_sed_doc() (in module biosimulators_bionetgen.core)

exec_sed_task() (in module biosimulators_bionetgen.core) exec_sedml_docs_in_combine_archive() (in module biosimulators_bionetgen.core)

G

get_simulator_version() (in module biosimulators_bionetgen)

get_variables_results_from_observable_results() (in module biosimulators_bionetgen.utils)

I

IgnoredBnglFileContentWarning is_equal() (biosimulators_bionetgen.data_model.Model method) (biosimulators_bionetgen.data_model.ModelBlock method) (biosimulators_bionetgen.data_model.Task method)

M

Model (class in biosimulators_bionetgen.data_model) ModelBlock (class in biosimulators_bionetgen.data_model) module biosimulators_bionetgen biosimulators_bionetgen.config biosimulators_bionetgen.core biosimulators_bionetgen.data_model biosimulators_bionetgen.io biosimulators_bionetgen.utils biosimulators_bionetgen.warnings

P

preprocess_model_attribute_change() (in module biosimulators_bionetgen.utils)

preprocess_sed_task() (in module biosimulators_bionetgen.core)

R

read_simulation_results() (in module biosimulators_bionetgen.io)

read_task() (in module biosimulators_bionetgen.io)

T

Task (class in biosimulators_bionetgen.data_model)

W

write_task() (in module biosimulators_bionetgen.io)