biosimulators_utils.viz.vega package

Subpackages

• biosimulators_utils.viz.vega.escher package
  • Submodules
  • biosimulators_utils.viz.vega.escher.core module
    • escher_to_vega()
    • read_escher_map_config()
• biosimulators_utils.viz.vega.ginml package
  • Submodules
  • biosimulators_utils.viz.vega.ginml.core module
    • ginml_to_vega()
• biosimulators_utils.viz.vega.sbgn package
  • Submodules
  • biosimulators_utils.viz.vega.sbgn.core module
    • sbgn_pd_map_to_vega()

Submodules

biosimulators_utils.viz.vega.utils module

Utilities for working with Vega

Author:

Jonathan Karr <karr@mssm.edu>

Date:

2021-07-22

Copyright:

2021, Center for Reproducible Biomedical Modeling

License:

MIT

biosimulators_utils.viz.vega.utils.dict_to_vega_dataset(data_dict)

Convert a dictionary of values, such as that produced by COBRApy, into a Vega dataset (array of data elements)

Parameters:

data_dict (dict) – dictionary that maps the labels of predicted variables to their predicted values

Returns:

list of data elements, each with two keys label and values` whose values

are the labels of each variable and an array of their predicted values

Return type:

list