biosimulators_utils.model_lang.neuroml package#

Submodules#

biosimulators_utils.model_lang.neuroml.validation module#

Utilities for validating NeuroML models

Author:: Jonathan Karr <karr@mssm.edu>
Date:: 2021-05-10
Copyright:: 2021, Center for Reproducible Biomedical Modeling
License:: MIT

biosimulators_utils.model_lang.neuroml.validation.validate_model(filename, name=None, config=None)[source]#

Check that a model is valid

Parameters:

filename (str) – path to model
name (str, optional) – name of model for use in error messages
config (Config, optional) – whether to fail on missing includes

Returns:

nested list of str: nested list of errors (e.g., required ids missing or ids not unique)
nested list of str: nested list of errors (e.g., required ids missing or ids not unique)
neuroml.nml.nml.NeuroMLDocument: model

Return type:

tuple

biosimulators_utils.model_lang.neuroml.validation.validate_model_l1(filename)[source]#

Check that a file is a valid NeuroML L1 model

Parameters:

filename (str) – path to model

Returns:

bool: whether the file is valid
str: error message

Return type:

tuple

biosimulators_utils.model_lang.neuroml.validation.validate_model_l2(filename)[source]#

Check that a file is a valid NeuroML L2 model

Parameters:

filename (str) – path to model

Returns:

bool: whether the file is valid
str: error message

Return type:

tuple