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BioSimulators utils documentation#

Command-line application and high-level utilities for reading, writing, validating, and executing COMBINE/OMEX format files that contain descriptions of simulations in Simulation Experiment Description Markup Language (SED-ML) format with models in formats such as the BioNetGen Language (BNGL) and the Systems Biology Markup Language (SBML).

Contents#

  • Installation instructions
    • Requirements
    • Optional requirements
    • Installing the latest release from PyPI
    • Installing the latest revision from GitHub
    • Installing the optional features
    • Dockerfile and Docker image
  • Tutorials
  • API documentation
    • Subpackages
    • Submodules
    • biosimulators_utils.config module
    • biosimulators_utils.data_model module
    • biosimulators_utils.exceptions module
    • biosimulators_utils.globals module
    • biosimulators_utils.image module
    • biosimulators_utils.warnings module
  • About BioSimulators utils
    • License
    • Development team
    • Contributing to BioSimulators utils
    • Acknowledgements
    • Questions and comments
  • Index
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  • Contents
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