Index

B

biosimulators_pyneuroml module, [1] biosimulators_pyneuroml.api module biosimulators_pyneuroml.api.brian2 module biosimulators_pyneuroml.api.netpyne module biosimulators_pyneuroml.api.neuron module biosimulators_pyneuroml.api.pyneuroml module biosimulators_pyneuroml.cli module biosimulators_pyneuroml.cli.brian2 module

biosimulators_pyneuroml.cli.netpyne module biosimulators_pyneuroml.cli.neuron module biosimulators_pyneuroml.cli.pyneuroml module biosimulators_pyneuroml.core module, [1] biosimulators_pyneuroml.data_model module biosimulators_pyneuroml.utils module brian2 (biosimulators_pyneuroml.data_model.Simulator attribute) (biosimulators_pyneuroml.Simulator attribute), [1]

C

cleanup (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)

compile_mods (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)

E

exec_in_dir (biosimulators_pyneuroml.data_model.RunLemsOptions attribute) exec_sed_doc() (in module biosimulators_pyneuroml), [1] (in module biosimulators_pyneuroml.api.brian2) (in module biosimulators_pyneuroml.api.netpyne) (in module biosimulators_pyneuroml.api.neuron) (in module biosimulators_pyneuroml.api.pyneuroml) (in module biosimulators_pyneuroml.core), [1] exec_sed_task() (in module biosimulators_pyneuroml), [1] (in module biosimulators_pyneuroml.api.brian2) (in module biosimulators_pyneuroml.api.netpyne) (in module biosimulators_pyneuroml.api.neuron) (in module biosimulators_pyneuroml.api.pyneuroml) (in module biosimulators_pyneuroml.core), [1]

exec_sedml_docs_in_combine_archive() (in module biosimulators_pyneuroml), [1] (in module biosimulators_pyneuroml.api.brian2) (in module biosimulators_pyneuroml.api.netpyne) (in module biosimulators_pyneuroml.api.neuron) (in module biosimulators_pyneuroml.api.pyneuroml) (in module biosimulators_pyneuroml.core), [1] exit_on_fail (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)

G

get_available_memory() (in module biosimulators_pyneuroml.utils) get_available_processors() (in module biosimulators_pyneuroml.utils) get_run_lems_options() (in module biosimulators_pyneuroml.utils) get_simulator_run_lems_method() (in module biosimulators_pyneuroml.utils)

get_simulator_version() (in module biosimulators_pyneuroml.api.brian2) (in module biosimulators_pyneuroml.api.netpyne) (in module biosimulators_pyneuroml.api.neuron) (in module biosimulators_pyneuroml.api.pyneuroml)

L

load_saved_data (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)

M

main() (in module biosimulators_pyneuroml.cli.brian2) (in module biosimulators_pyneuroml.cli.netpyne) (in module biosimulators_pyneuroml.cli.neuron) (in module biosimulators_pyneuroml.cli.pyneuroml) max_memory (biosimulators_pyneuroml.data_model.RunLemsOptions attribute) module biosimulators_pyneuroml, [1] biosimulators_pyneuroml.api biosimulators_pyneuroml.api.brian2 biosimulators_pyneuroml.api.netpyne biosimulators_pyneuroml.api.neuron biosimulators_pyneuroml.api.pyneuroml biosimulators_pyneuroml.cli biosimulators_pyneuroml.cli.brian2 biosimulators_pyneuroml.cli.netpyne biosimulators_pyneuroml.cli.neuron biosimulators_pyneuroml.cli.pyneuroml biosimulators_pyneuroml.core, [1] biosimulators_pyneuroml.data_model biosimulators_pyneuroml.utils

N

netpyne (biosimulators_pyneuroml.data_model.Simulator attribute) (biosimulators_pyneuroml.Simulator attribute), [1] neuron (biosimulators_pyneuroml.data_model.Simulator attribute) (biosimulators_pyneuroml.Simulator attribute), [1]

no_gui (biosimulators_pyneuroml.data_model.RunLemsOptions attribute) num_processors (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)

O

only_generate_scripts (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)

P

paths_to_include (biosimulators_pyneuroml.data_model.RunLemsOptions attribute) plot (biosimulators_pyneuroml.data_model.RunLemsOptions attribute) preprocess_sed_task() (in module biosimulators_pyneuroml), [1] (in module biosimulators_pyneuroml.api.brian2) (in module biosimulators_pyneuroml.api.netpyne) (in module biosimulators_pyneuroml.api.neuron) (in module biosimulators_pyneuroml.api.pyneuroml) (in module biosimulators_pyneuroml.core), [1]

pyneuroml (biosimulators_pyneuroml.data_model.Simulator attribute) (biosimulators_pyneuroml.Simulator attribute), [1]

R

read_lems_output_files_configuration() (in module biosimulators_pyneuroml.utils) read_xml_file() (in module biosimulators_pyneuroml.utils) realtime_output (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)

reload_events (biosimulators_pyneuroml.data_model.RunLemsOptions attribute) run_lems_xml() (in module biosimulators_pyneuroml.utils) RunLemsOptions (class in biosimulators_pyneuroml.data_model)

S

set_sim_in_lems_xml() (in module biosimulators_pyneuroml.utils) show_plot_already (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)

Simulator (class in biosimulators_pyneuroml), [1] (class in biosimulators_pyneuroml.data_model) skip_run (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)

T

to_kw_args() (biosimulators_pyneuroml.data_model.RunLemsOptions method)

V

validate_lems_document() (in module biosimulators_pyneuroml.utils)

validate_task() (in module biosimulators_pyneuroml.utils) verbose (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)

W

write_lems_output_files_configuration() (in module biosimulators_pyneuroml.utils)

write_xml_file() (in module biosimulators_pyneuroml.utils)