Installation instructions

BioSimulators-OpenCOR is available as a command-line program and as a command-line program encapsulated into a Docker image.

Python Package and command-line program

1. Install the requirements for OpenCOR:

   apt-get install -y \
       curl \
       libpulse-mainloop-glib0 \
       libx11-6 \
       libxext6 \
       libxslt1.1 \
       sqlite3
   

2. Install OpenCOR:

   url=https://opencor.ws/downloads/snapshots/2021-05-19/OpenCOR-2021-05-19-Linux.tar.gz
   curl $url | tar -xz --directory=/opt/
   

3. Add OpenCOR to your system path:

   export PATH=/opt/OpenCOR-2021-05-19-Linux:$PATH
   

4. Install pip for this version of Python:

   curl https://bootstrap.pypa.io/get-pip.py | OpenCOR -c PythonShell
   

5. Use pip to install this package:

   /opt/OpenCOR-2021-05-19-Linux/python/bin/python -m pip install biosimulators-opencor
   

Docker image with a command-line entrypoint

After installing Docker, run the following command to install the Docker image for BioSimulators-OpenCOR:

docker pull ghcr.io/biosimulators/opencor