BioSimulators-MASSpy documentation

BioSimulators-MASSpy provides a BioSimulators-compliant command-line interface to the MASSpy tool for kinetic simulation of metabolic reaction networks. A Docker image for this package is also available.

This command-line interface and Docker image enable users to use MASSpy to execute COMBINE/OMEX archives that describe one or more simulation experiments (in SED-ML format) of one or more kinetic models of metabolic networks in the MASSpy schema for the SBML format.

A list of the algorithms and algorithm parameters supported by MASSpy is available at BioSimulators.

A simple web application and web service for using MASSpy to execute COMBINE/OMEX archives is also available at runBioSimulations.