Index

A

adams (biosimulators_gillespy2.data_model.VodeMethod attribute)

Algorithm (class in biosimulators_gillespy2.data_model) AlgorithmParameter (class in biosimulators_gillespy2.data_model)

B

BDF (biosimulators_gillespy2.data_model.HybridTauIntegrationMethod attribute) bdf (biosimulators_gillespy2.data_model.VodeMethod attribute) biosimulators_gillespy2 module

biosimulators_gillespy2.core module biosimulators_gillespy2.data_model module

D

data_type (biosimulators_gillespy2.data_model.AlgorithmParameter attribute)

default (biosimulators_gillespy2.data_model.AlgorithmParameter attribute)

E

exec_sed_doc() (in module biosimulators_gillespy2) (in module biosimulators_gillespy2.core) exec_sed_task() (in module biosimulators_gillespy2) (in module biosimulators_gillespy2.core)

exec_sedml_docs_in_combine_archive() (in module biosimulators_gillespy2) (in module biosimulators_gillespy2.core)

G

get_simulator_version() (in module biosimulators_gillespy2)

H

HybridTauIntegrationMethod (class in biosimulators_gillespy2.data_model)

K

key (biosimulators_gillespy2.data_model.AlgorithmParameter attribute)

L

LSODA (biosimulators_gillespy2.data_model.HybridTauIntegrationMethod attribute)

M

module biosimulators_gillespy2 biosimulators_gillespy2.core biosimulators_gillespy2.data_model

N

name (biosimulators_gillespy2.data_model.Algorithm attribute) (biosimulators_gillespy2.data_model.AlgorithmParameter attribute)

P

parameters (biosimulators_gillespy2.data_model.Algorithm attribute)

preprocess_sed_task() (in module biosimulators_gillespy2) (in module biosimulators_gillespy2.core)

R

Radau (biosimulators_gillespy2.data_model.HybridTauIntegrationMethod attribute)

RK23 (biosimulators_gillespy2.data_model.HybridTauIntegrationMethod attribute) RK45 (biosimulators_gillespy2.data_model.HybridTauIntegrationMethod attribute)

S

set_value() (biosimulators_gillespy2.data_model.AlgorithmParameter method)

solver (biosimulators_gillespy2.data_model.Algorithm attribute) solver_args (biosimulators_gillespy2.data_model.Algorithm attribute)

V

VodeMethod (class in biosimulators_gillespy2.data_model)