BioSimulators-AMICI documentation

BioSimulators-AMICI provides a BioSimulators-compliant command-line interface to the AMICI biological simulation tool. A Docker image for this package is also available.

This command-line interface and Docker image enable users to use AMICI to execute COMBINE/OMEX archives that describe one or more simulation experiments (in SED-ML format) of one or more models (in SBML format).

A list of the algorithms and algorithm parameters supported by AMICI is available at BioSimulators.

A simple web application and web service for using AMICI to execute COMBINE/OMEX archives is also available at runBioSimulations.